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Wed 10 Jun 2015
09:30 - 17:00

Venue: Bioinformatics Training Room, Craik-Marshall Building, Downing Site

Provided by: Bioinformatics


Booking

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Booking / availability

EMBL-EBI: Network Analysis - Cytoscape and PSICQUIC
Prerequisites

Wed 10 Jun 2015

Description

This session provides an introduction to Network Analysis using Cytoscape and PSICQUIC [from the European Bioinformatics Institute (EBI)]. It is aimed at biologists and computer scientists wanting to learn the basics of network analysis. Further information for this session is available here.

Please note that if you are not eligible for a University of Cambridge Raven account you will need to book by linking here.

Target audience
  • Graduate students, Postdocs and Staff members from the University of Cambridge, Affiliated Institutions and other external Institutions or individuals
  • Further details regarding eligibility criteria are available here
  • Further details regarding the charging policy are available here
Prerequisites
  • Basic knowledge of interaction data resources and techniques is recommended
  • No previous experience with Cytoscape or PSICQUIC is required
Sessions

Number of sessions: 2

# Date Time Venue Trainer
1 Wed 10 Jun 2015   09:30 - 12:30 09:30 - 12:30 Bioinformatics Training Room, Craik-Marshall Building, Downing Site map Pablo Porras
2 Wed 10 Jun 2015   13:30 - 17:00 13:30 - 17:00 Bioinformatics Training Room, Craik-Marshall Building, Downing Site map Pablo Porras
Objectives

After this course you should be able to:

  • Comprehend the basic principles of network analysis
  • Use the PSICQUIC client to integrate public molecular interaction data
  • Analyse and represent networks using Cytoscape
  • Integrate external data
  • Apply attribute-based filters
  • Use plugins for clustering and GO enrichment
Aims

During this course you will learn about:

  • Molecular Interaction Network Analysis
Format

Presentations, demonstrations and practicals

Duration

One full day session

Frequency

A number of times per year

Themes

Booking / availability