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10 Days of Twitter: Beginner's course new Mon 18 Jan 2016   10:00 Finished

Learn the basics of Twitter by completing 1 short online activity per day, for 10 days and join the global network of researchers who already use it (http://www.nature.com/news/online-collaboration-scientists-and-the-social-network-1.15711)

This is an online course - you will NOT be required to attend a workshop session.

Tasks will cover:

  • the basics – how to set up an account, follow people and send tweets
  • the conventions (@, #, RT, etc.)
  • etiquette and social conventions
  • the plethora of ‘apps’ or third party tools to add on
  • strategies for tweeting effectively and building a network
An Introduction to data analysis in R new Mon 25 Sep 2017   14:00 Finished

R is a free, software environment for statistical and data analysis, with many useful features that promote and facilitate reproducible research.

In this course, we introduce the R language, and cover basic data manipulation and plotting. We explore more advanced data analysis techniques using the packages dplyr and ggplot. Finally we introduce the concept of reproducible research, and how this may be assisted using 'literate programming'—combining documentation with code.

After the course you should feel confident to start exploring your own dataset, using the materials and references provided.

Sessions

If you book onto this course you must attend all of the sessions as detailed below. Failure to attend a session or cancellation of your place less than 48 hours before the start of the first session will result in an administrative charge of £50.

Please ensure you have permission from your supervisor to attend this course before you make your booking!

Trainers

Dr Michael Grayling, MRC Biostatistics Unit

Dr Simon Frost, Department of Veterinary Medicine

Dr Matt Castle, GSLS

An Introduction to Regulatory Affairs new Wed 29 Jun 2016   14:30 Finished

During this one hour presentation I will introduce you to the challenging and diverse topic of regulatory affairs in the pharmaceutical industry and cover some of the aspects we are faced with day to day in the country role. In particular we will look at some of the issues faced with fraudulent and counterfeit medicines and when looking at promotional affairs and product claim development, as these are the two topics for a potential project with Gilead.

About Gilead Sciences Gilead is one of the world's most successful biotech companies with a current market capitalisation of over $150 billion, Gilead Sciences Inc. (www.gilead.com) is a leading research-based biopharmaceutical company which discovers, develops and commercialises innovative medicines in life-threatening diseases. Gilead's primary areas of focus include HIV/AIDS, liver diseases, respiratory diseases, cardiovascular/metabolic diseases, inflammation and oncology

About Alan Collins Alan has 18 years of experience in the pharmaceutical industry and is a Director of Regulatory Affairs at Gilead Sciences. Alan's experience covers the many diverse areas of regulatory affairs, plus pricing and reimbursement, medical affairs, business conduct and auditing - he has never had two working days the same and enjoys the variety and challenge of his role.

An Introduction to R: Software For Statistical Analysis, with Dr Simon R. White, MRC Biostatistics Unit, and Dr Adam P. Wagner, University of Cambridge.

GNU R is (freely) available for all major platforms (Microsoft Windows, Linux, Mac, etc.) and is growing in popularity in academia and beyond for carrying out statistical analysis and data manipulation.

The aim of the course is to introduce participants to the basics of statistical analysis and the open source statistical software GNU R.

Participants will actively use R throughout the course, during which they will be introduced to principles of statistical thinking and interpretation by example, exercises and discussion about a range of problems. The examples will be used to present a variety of statistical concepts and techniques, with no focus on any specific discipline.

Participants Without a Raven Password: If you do not have a Raven's account and would like to attend this course, or have other booking queries, please email Adam Wagner (apw40@medschl.cam.ac.uk).

2 other events...

Date Availability
Wed 22 Oct 2014 13:30 Finished
Thu 12 Mar 2015 14:30 Finished
An Introduction to Scientific Writing (workshop) Mon 9 Feb 2015   09:30 Finished

This course will focus on the structure of good scientific writing, first at the micro-level of sentences and paragraphs and then at the macro-level of abstracts and entire papers. Writing exercises will form an important part of the day. We will look at into the practical process of writing, the nature of scientific publishing and the importance of editing. The day will finish with a group editing session in which the students apply the ideas they've learnt to editing each other's work. For this students will write a 300-word abstract about their mini-dissertation in advance. The course instructors are Mark Buchanan and Justin Mullins, two highly experienced scientific writers/editors.

Because pre-course work is required, bookings must be made by 9 Jan 2015 and cancellations cannot be accepted thereafter.

The course will present intermediate to advanced R programming using the object-oriented programming paradigm. It will cover how to document code and data to produce a fully functional R package. Further information is available here.

The Course Web Site providing links to the course materials is here.

Please note that if you are not eligible for a University of Cambridge Raven account you will need to Book register Interest by linking here.

8 other events...

Date Availability
Mon 14 Nov 2011 09:30 Finished
Mon 20 Feb 2012 09:30 Finished
Tue 29 May 2012 09:30 Finished
Mon 26 Nov 2012 09:30 Finished
Wed 20 Mar 2013 09:30 Finished
Wed 19 Jun 2013 09:30 Finished
Wed 25 Sep 2013 09:30 Finished
Wed 19 Mar 2014 09:30 Finished

SeqMonk is a graphical program for the visualisation and analysis of large mapped datasets such as ChIP-Seq, RNA-Seq, and BS-Seq. Further information is available here.

Please note that if you are not eligible for a University of Cambridge Raven account you will need to book by linking here.

5 other events...

Date Availability
Mon 18 Feb 2013 09:30 Finished
Fri 5 Jul 2013 09:30 Finished
Mon 4 Nov 2013 09:30 Finished
Wed 5 Feb 2014 09:30 Finished
Fri 11 Jul 2014 09:30 Finished
  • This course will cover all aspects of The analysis of DNA Methylation using Sequencing. It will cover the primary analysis, mapping and Quality Control (QC) of BS-Seq data and will talk about common pitfalls and complications. It will then cover exploratory analysis of Methylation looking at different methods of Quantitation' and a variety of ways of looking more widely at the distribution of Methylation over the genome. Finally the course will look at statistical methods to predict differential Methylation.
  • The course will be comprised of a mixture of theoretical lectures and practicals covering a range of different software packages.
  • By the end of the course students should be able to perform an analysis of Methylation Data all the way from raw sequencing to the selection of interesting targets.
  • Further information, including a Timetable, will soon be available.

Please note that if you are not eligible for a University of Cambridge Raven account you will need to book by linking here.

This course provides an introduction to the tools available through the Bioconductor project for manipulating and analysing high-throughput sequencing data. We will present workflows for the analysis of CHip-Seq and RNA-seq, as well as tools to annotate and visualise results derived from other sequencing experiments (such as DNA resequencing) Further information is available here.

Please note that if you are not eligible for a University of Cambridge Raven account you will need to book by linking here.

2 other events...

Date Availability
Mon 16 Sep 2013 09:00 Finished
Wed 12 Mar 2014 09:30 Finished
Bioinformatics: An Introduction to MATLAB new Thu 28 Aug 2014   09:30   [More dates...] Finished

A two-day course designed to introduce MATLAB and some basic programming concepts. Further information is available here.

Please note that if you are not eligible for a University of Cambridge Raven account you will need to Book or register Interest by linking here.

4 other events...

Date Availability
Mon 23 Sep 2013 09:30 Finished
Tue 7 Jan 2014 09:30 Finished
Mon 10 Mar 2014 09:30 Finished
Thu 5 Jun 2014 09:30 Finished

This course provides a gentle and practical introduction to the writing of Python programs for the complete novice. Participants are lead through the core aspects of Python illustrated by a series of example programs. Upon completion of the course, attentive participants will be able to write simple Python programs from scratch and to customize more complex code to fit their needs. Further information is available here.

The Course Web Site providing links to the course materials is here.

Please note that if you are not eligible for a University of Cambridge Raven account you will need to book by linking here.

13 other events...

Date Availability
Wed 7 Mar 2012 09:30 Finished
Tue 28 May 2013 09:30 Finished
Mon 3 Jun 2013 09:30 Finished
Mon 29 Jul 2013 09:30 Finished
Thu 15 Aug 2013 09:30 Finished
Thu 12 Sep 2013 09:30 Finished
Thu 3 Oct 2013 09:30 Finished
Mon 17 Mar 2014 09:30 Finished
Tue 22 Apr 2014 09:30 Finished
Thu 22 May 2014 09:30 Finished
Mon 2 Jun 2014 09:30 Finished
Mon 14 Jul 2014 09:30 Finished
Mon 18 Aug 2014 09:30 Finished

This course provides an introduction to the R programming language and software environment for statistical computing and graphics. A variety of examples with a biological theme will be presented. Further information is available here.

The Course Web Site providing links to the course materials is here.

Please note that if you are not eligible for a University of Cambridge Raven account you will need to book or register Interest by linking here.

29 other events...

Date Availability
Thu 22 Sep 2011 09:30 Finished
Mon 5 Dec 2011 09:30 Finished
Mon 5 Mar 2012 09:30 Finished
Thu 12 Apr 2012 09:30 Finished
Wed 6 Jun 2012 09:30 Finished
Thu 26 Jul 2012 09:30 Finished
Thu 20 Sep 2012 09:30 Finished
Mon 3 Dec 2012 09:30 Finished
Wed 19 Dec 2012 09:30 Finished
Thu 10 Jan 2013 09:30 Finished
Mon 11 Mar 2013 09:30 Finished
Mon 18 Mar 2013 09:30 Finished
Mon 29 Apr 2013 09:30 Finished
Mon 17 Jun 2013 09:30 Finished
Thu 18 Jul 2013 09:30 Finished
Thu 22 Aug 2013 09:30 Finished
Thu 19 Sep 2013 09:30 Finished
Mon 18 Nov 2013 09:30 Finished
Mon 2 Dec 2013 09:30 Finished
Wed 19 Feb 2014 09:30 Finished
Thu 6 Mar 2014 09:30 Finished
Thu 13 Mar 2014 09:30 Finished
Thu 27 Mar 2014 09:30 Finished
Mon 28 Apr 2014 09:30 Finished
Mon 16 Jun 2014 09:30 Finished
Thu 17 Jul 2014 09:30 Finished
Thu 21 Aug 2014 09:30 Finished
Wed 17 Sep 2014 09:30 Finished
Thu 13 Nov 2014 09:30 Finished
Bioinformatics: A Practical User Introduction new Mon 22 Jul 2013   09:30   [More dates...] Finished

This course sets out to introduce simple computing tools for molecular biologists. It is intended for users with a reasonable background in molecular biology but little or no experience of using the available computer resources. The course is based around an investigation into the disease aniridia. We have chosen a well researched human topic as it allows us best to demonstrate how information can be obtained both by analysis of raw sequence data and by interrogation of information resources where previously determined facts are organised and stored. Further information for this session is available.

Please note that if you are not eligible for a University of Cambridge Raven account you will need to book by linking here.

3 other events...

Date Availability
Mon 12 Nov 2012 09:30 Finished
Wed 5 Dec 2012 09:30 Finished
Wed 13 Mar 2013 09:30 Finished

An understanding protein structure is vital for the elucidation of its function. Information gleaned from the three dimensional structures of proteins is used to understand the biochemical and functional roles of such molecules in life and for the design and discovery of drug molecules for a variety of diseases and illnesses such as cancer, influenza and tuberculosis.

The Protein Data Bank (PDB) is the central publicly accessible repository of all experimentally derived macromolecular structures. Containing over 80,000 structures of proteins and nucleic acids the PDB is an essential scientific resource.

The PDB is managed by a consortium of international organizations collectively known as the worldwide Protein Data Bank (wwPDB). The Protein Data Bank in Europe (PDBe) is one of the founding members of the wwPDB along with the RCSB Protein Data Bank in the USA and Protein Data Bank Japan(PDBj) in Japan.

In addition to serving as a deposition site for data deposited to the PDB, the PDBe also provides services for the search and analysis of the collective wealth of data contained within the PDB. Further information is available here.

This session is one of a series of short introductions to EBI Services, run together, but bookable separately (see Related Courses section below).

Please note that if you are not eligible for a University of Cambridge Raven account you will need to Book or register Interest by linking here.

4 other events...

Date Availability
Fri 30 Mar 2012 09:30 Finished
Mon 29 Oct 2012 09:30 Finished
Wed 6 Feb 2013 09:30 Finished
Tue 29 Oct 2013 09:30 Finished

An introduction on how to search EBI databases using sequence search tools. The workshop will introduce tools such as BLAST, FASTA and PSI-BLAST; explain how they function and the ways to make effective use of them to locate different types of biological data and information. Further information is available here.

This session is one of a series of short introductions to EBI Services, run together, but bookable separately (see Related Courses section below).

Please note that if you are not eligible for a University of Cambridge Raven account you will need to Book or register Interest by linking here.

2 other events...

Date Availability
Tue 22 Oct 2013 13:30 Finished
Tue 28 Jan 2014 13:30 Finished

This session provides an introduction to the European Nucleotide Archive (ENA) record of the world's nucleotide sequencing information, covering raw sequencing data, sequence assembly information and functional annotation available from the Europian Bioinformatics Institute (EBI). Further information for this session is available here.

This session is one of a series of short introductions to EBI Services, run together, but bookable separately (see Related Courses section below).

Please note that if you are not eligible for a University of Cambridge Raven account you will need to book by linking here.

2 other events...

Date Availability
Wed 24 Oct 2012 13:00 Finished
Wed 23 Jan 2013 13:00 Finished

This workshop will introduce open-source tools for creating, representing and analysing molecular interaction data. Practical sessions will explore the EMBL-EBI IntAct database and use Cytoscape visualise protein interactions. Further information for this session is available here.

This session is one of a series of short introductions to EBI Services, run together, but bookable separately (see Related Courses section below).

Please note that if you are not eligible for a University of Cambridge Raven account you will need to book by linking here.

1 other event...

Date Availability
Thu 23 Jan 2014 13:30 Finished

This workshop will introduce open-source tools for creating, representing and analysing molecular interaction data. Practical sessions will explore the Reactome pathway database, showing participants how to navigate molecular reactions and the pathways they form. Further information for this session is available here.

This session is one of a series of short introductions to EBI Services, run together, but bookable separately (see Related Courses section below).

Please note that if you are not eligible for a University of Cambridge Raven account you will need to book by linking here.

1 other event...

Date Availability
Fri 24 Jan 2014 13:30 Finished

An introduction the European Molecular Biology Laboratory (EMBL), European Bioinformatics Institute (EBI). The workshop will introduce ways to navigate the website, search EBI database resources and access useful information and metadata. It will also highlight additional resources such as Train Online. Further information is available here.

This session is one of a series of short introductions to EBI Services, run together, but bookable separately (see Related Courses section below).

Please note that if you are not eligible for a University of Cambridge Raven account you will need to book by linking here.

5 other events...

Date Availability
Tue 22 Jan 2013 13:00 Finished
Fri 11 Oct 2013 09:30 Finished
Fri 11 Oct 2013 13:30 Finished
Wed 22 Jan 2014 13:30 Finished
Fri 14 Feb 2014 13:30 Finished

This session provides an introduction to Network Analysis at the European Bioinformatics Institute (EBI). Further information for this session is available here.

This session is one of a series of short introductions to EBI Services, run together, but bookable separately (see Related Courses section below).

Please note that if you are not eligible for a University of Cambridge Raven account you will need to book by linking here.

1 other event...

Date Availability
Mon 27 Jan 2014 09:30 Finished

An introduction to the chemical biology resources available from the EBI. The workshop will cover ontology and bio-activity data, structure representation and tools for protein-ligand investigation. Further information is available here.

This session is one of a series of short introductions to EBI Services, run together, but bookable separately (see Related Courses section below).

Please note that if you are not eligible for a University of Cambridge Raven account you will need to Book or register Interest by linking here.

1 other event...

Date Availability
Wed 30 Oct 2013 13:30 Finished
Bioinformatics: Ensembl API Workshops Tue 2 Dec 2014   09:30   [More dates...] Finished
  • This workshop is aimed at researchers and developers interested in exploring Ensembl beyond the website.
  • The workshop covers the Core (Day 1), Variation (Day 2), Functional Genomics (Regulation) (Day3), and Compara (Day4) databases and APIs.
  • Each database schema and API design will be presented in association with practical sessions in which the participants will write their own Perl scripts.
  • Further information concerning course content is available.
  • This course is comprised of 4 one day sessions.
  • The first Core API session (or equivalent experience) is a mandatory prerequisite to the other 3 sessions.
  • Please specify which of the optional sessions you wish to attend when booking. The default is "all three of them".
  • Participants are requested to give us a little information about their background & requirements by registering here.
  • The course fee, for those participants required to pay, will be £100 independent of the number of sessions attended.
  • The course timetable can be viewed here.

Please note that if you are not eligible for a University of Cambridge Raven account you will need to book by linking here.

6 other events...

Date Availability
Wed 30 Nov 2011 09:30 Finished
Wed 21 Mar 2012 09:30 Finished
Wed 28 Nov 2012 09:30 Finished
Wed 3 Apr 2013 09:30 Finished
Wed 4 Dec 2013 09:30 Finished
Tue 1 Apr 2014 09:30 Finished

Exploring Protein Sequence and Functional Information with UniProt.

The Universal Protein Resource (UniProt) is a comprehensive resource for protein sequence and annotation data. UniProt aids scientific discovery by collecting, interpreting and organising protein information in one site so that it is easy to access and use. It provides tools to help with protein sequence analysis as well as links to more than 150 other biological databases to help you access additional information. This course is a guide to the UniProt resource, covering the types of data it provides and how to access the data using the UniProt website. It will go through the protein information and analysis tools available in UniProt in a series of presentations and hands-on exercises.

Further information, including a detailed timetable, is available here.

Please note that if you are not eligible for a University of Cambridge Raven account you will need to book by linking here.

Annotators from the Pathogen Genomics Group at the Wellcome Trust Sanger Institute give a comprehensive introduction to the latest Genome Analysis software (Artemis and ACT). Further information is available here.

Please note that if you are not eligible for a University of Cambridge Raven account you will need to book by linking here.

5 other events...

Date Availability
Thu 26 Apr 2012 09:30 Finished
Thu 27 Sep 2012 09:30 Finished
Thu 25 Apr 2013 09:30 Finished
Thu 26 Sep 2013 09:30 Finished
Thu 24 Apr 2014 09:30 Finished
Bioinformatics: Genomics in Medicine new charged Fri 27 Sep 2013   09:00 Finished
  • 'Bioinformatics: Genomics in Medicine ' has been approved by the Federation of the Royal Colleges of Physicians of the United Kingdom for 6 category 1 (external) CPD credits.

This course, devised by Life Technologies in conjunction with internationally regarded experts, offers a unique learning opportunity for healthcare professionals who are looking to gain knowledge and practical guidance in genomics and pharmacogenomics. No laboratory work will be involved. The course will be comprised of lectures, demonstrations and discussion activities and will focus on how modern DNA sequencing technologies are impacting clinical medicine. Further information is available here.

Booking for this event:

Raven password holders may book a provisional place on this course for themselves. It would be helpful, and save time if they would also follow the procedures for people without a Raven password, specified as follows.

To apply for a place on this course, please fill in your details here

A place will be reserved for you and you will be contacted as soon as your application has been reviewed.

Successful applicants will be provided with details of how to make payment of the course fee of £200 within 2 working days. Your reservation will be confirmed on receipt of the course fee.

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