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Theme: SBS Practical Bioinformatics Training: Programming

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The course will present intermediate to advanced R programming using the object-oriented programming paradigm. It will cover how to document code and data to produce a fully functional R package. Further information is available here.

The Course Web Site providing links to the course materials is here.

Please note that if you are not eligible for a University of Cambridge Raven account you will need to Book register Interest by linking here.

This course is aimed at those new to programming and provides an introduction to programming using Perl. By the end of this course, attendees should be able to write simple Perl programs and to understand more complex Perl programs written by others. The course will be taught using the online Learning Perl materials created by Sofia Robb of the University of California Riverside. Further information is available.

The Course Web Site providing links to the course materials is here.

Please note that if you are not eligible for a University of Cambridge Raven account you will need to book by linking here.

This course provides a gentle and practical introduction to the writing of Python programs for the complete novice. Participants are lead through the core aspects of Python illustrated by a series of example programs. Upon completion of the course, attentive participants will be able to write simple Python programs from scratch and to customize more complex code to fit their needs. Further information is available here.

The Course Web Site providing links to the course materials is here.

Please note that if you are not eligible for a University of Cambridge Raven account you will need to book by linking here.

This course provides an introduction to the R programming language and software environment for statistical computing and graphics. A variety of examples with a biological theme will be presented. Further information is available here.

The Course Web Site providing links to the course materials is here.

Please note that if you are not eligible for a University of Cambridge Raven account you will need to book or register Interest by linking here.

Bioinformatics: Python for Bioinformatics new Thu 8 Mar 2012   09:30 Finished

This course introduces the use of Python for Bioinformatics applications. Further information is available.

Please note that if you are not eligible for a University of Cambridge Raven account you will need to book by email.

Bioinformatics: Python for MRI Applications new Mon 21 May 2012   10:00 CANCELLED

This course introduces coding in Python at a basic level and the construction of simple software tools for MRI analysis. Further information is available.

Please note that if you are not eligible for a University of Cambridge Raven account you will need to book by email.

Bioinformatics: An Introduction to MATLAB new Thu 28 Aug 2014   09:30 Finished

A two-day course designed to introduce MATLAB and some basic programming concepts. Further information is available here.

Please note that if you are not eligible for a University of Cambridge Raven account you will need to Book or register Interest by linking here.

This course is organized by the Software Carpentry Project. Python will be used to explore program design, but we aim to cover principles that are applicable to other programming languages, so if you are an R or Matlab user you can also learn something useful. The course will include sessions covering command line UNIX, Version control with Git and programming, testing and debugging in Python.

Applicants for this course are required to complete the survey that can be found here. Applicants will be accepted on condition that their background and motivation fit the course content.

Further information is available here.

Please note that if you are not eligible for a University of Cambridge Raven account you will need to book by linking here.

Galaxy (http://galaxyproject.org/) is an open, web-based platform for data intensive life science research that enables non-bioinformaticians to create, run, tune, and share their own bioinformatic analyses. This introductory course will cover Galaxy's basic functionality, simple data manipulation and visualization. This event is mostly targeted at first time users. Further information is available from the course website.

Please note that if you are not eligible for a University of Cambridge Raven account you will need to Book register Interest by linking here.

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