Analysis of mapped NGS data with SeqMonk BeginnersPrerequisites
SeqMonk is a graphical program for the visualisation and analysis of large mapped sequencing datasets such as ChIP-Seq, RNA-Seq, and BS-Seq.
The program allows you to view your reads against an annotated genome and to quantitate and filter your data to let you identify regions of interest. It is a friendly way to explore and analysis very large datasets.
This course provides an introduction to the main features of SeqMonk and will run through the analysis of a couple of different datasets to show what sort of analysis options it provides.
Further information is available here.
Please note that if you are not eligible for a University of Cambridge Raven account you will need to book by linking here.
- Graduate students, Postdocs and Staff members from the University of Cambridge, Affiliated Institutions and other external Institutions or individuals
- Further details regarding eligibility criteria are available here
- Further details regarding the charging policy are available here
- A basic understanding of next generation sequencing and its applications
Number of sessions: 1
# | Date | Time | Venue | Trainers | |
---|---|---|---|---|---|
1 | Wed 19 Aug 2015 09:30 - 17:30 | 09:30 - 17:30 | Bioinformatics Training Room, Craik-Marshall Building | map | Simon Andrews, Bhupinder Virk |
Presentations, demonstrations and practicals
1
A number of times per year
- Analysis of high-throughput sequencing data with Bioconductor
- Analysis of mapped NGS data with SeqMonk (ONLINE LIVE TRAINING)
- Introduction to RNA-seq and ChIP-seq data analysis
Booking / availability